/* ========================================================================== */ /* === UMF_garbage_collection =============================================== */ /* ========================================================================== */ /* -------------------------------------------------------------------------- */ /* UMFPACK Copyright (c) Timothy A. Davis, CISE, */ /* Univ. of Florida. All Rights Reserved. See ../Doc/License for License. */ /* web: http://www.cise.ufl.edu/research/sparse/umfpack */ /* -------------------------------------------------------------------------- */ /* Compress the elements at the tail of Numeric->Memory, and delete the tuples. Elements are renumbered. The new numbering space is compressed, and in the order of element creation (original elements of A first, followed by the new elements in the order that they were formed). Only called by UMF_get_memory. There are 5 ways in which garbage collection can be performed: Allocate a new working array for the current frontal matrix. In this case, there are never any pivot rows/columns in the current frontal matrix (fnpiv = 0), and the old working array for the current frontal matrix can always be fully compacted, to fnrows-by-fncols. UMF_kernel : UMF_extend : UMF_grow_front : UMF_get_memory UMF_kernel : UMF_init_front : UMF_grow_front : UMF_get_memory UMF_kernel : UMF_start_front : UMF_grow_front : UMF_get_memory Allocate a new element. In this case, UMF_grow_front may or may not be subsequently called, depending on Work->do_grow. There are never any pivot rows/columns in the current frontal matrix (fnpiv=0), but one may be added if UMF_init_front is to be called just after UMF_create_element. If do_grow is true, then the current front can be fully compacted, to fnrows-by-fncols. Otherwise, it can only be partially compacted, to MAX (fnrows, fnrows_new + 1) -by- MAX (fncols, fncols_new + 1). UMF_kernel : UMF_create_element : UMF_get_memory Allocate rows of L and columns of U. In this case, the current frontal matrix is only partially compacted, to (fnrows_new + 1)-by- (fncols_new + 1). There are pivots in the frontal matrix (fnpiv > 0). UMF_kernel : UMF_store_lu : UMF_get_memory */ #include "umf_internal.h" GLOBAL void UMF_garbage_collection ( NumericType *Numeric, WorkType *Work, Int drnew, /* compact current front to drnew-by-dcnew */ Int dcnew, Int do_Fcpos ) { /* ---------------------------------------------------------------------- */ /* local variables */ /* ---------------------------------------------------------------------- */ Int size, e, n_row, n_col, nrows, ncols, nrowsleft, ncolsleft, prevsize, csize, size2, i2, j2, i, j, cdeg, rdeg, *E, row, col, *Rows, *Cols, *Rows2, *Cols2, nel, e2, *Row_tuples, *Col_tuples, *Row_degree, *Col_degree ; Entry *C, *C1, *C3, *C2 ; Unit *psrc, *pdest, *p, *pnext ; Element *epsrc, *epdest ; #ifndef NDEBUG Int nmark ; #endif /* ---------------------------------------------------------------------- */ /* get parameters */ /* ---------------------------------------------------------------------- */ Col_degree = Numeric->Cperm ; /* for NON_PIVOTAL_COL macro */ Row_degree = Numeric->Rperm ; /* for NON_PIVOTAL_ROW macro */ Row_tuples = Numeric->Uip ; Col_tuples = Numeric->Lip ; E = Work->E ; n_row = Work->n_row ; n_col = Work->n_col ; /* note that the tuple lengths (Col_tlen and Row_tlen) are updated, but */ /* the tuple lists themselves are stale and are about to be destroyed */ /* and recreated. Do not attempt to scan them until they are recreated. */ #ifndef NDEBUG DEBUGm1 (("::::GARBAGE COLLECTION::::\n")) ; UMF_dump_memory (Numeric) ; #endif Numeric->ngarbage++ ; /* ---------------------------------------------------------------------- */ /* delete the tuple lists by marking the blocks as free */ /* ---------------------------------------------------------------------- */ /* do not modify Row_tlen and Col_tlen */ /* those are needed for UMF_build_tuples */ for (row = 0 ; row < n_row ; row++) { if (NON_PIVOTAL_ROW (row) && Row_tuples [row]) { DEBUG2 (("row "ID" tuples "ID"\n", row, Row_tuples [row])) ; p = Numeric->Memory + Row_tuples [row] - 1 ; DEBUG2 (("Freeing tuple list row "ID", p-S "ID", size "ID"\n", row, (Int) (p-Numeric->Memory), p->header.size)) ; ASSERT (p->header.size > 0) ; ASSERT (p >= Numeric->Memory + Numeric->itail) ; ASSERT (p < Numeric->Memory + Numeric->size) ; p->header.size = -p->header.size ; Row_tuples [row] = 0 ; } } for (col = 0 ; col < n_col ; col++) { if (NON_PIVOTAL_COL (col) && Col_tuples [col]) { DEBUG2 (("col "ID" tuples "ID"\n", col, Col_tuples [col])) ; p = Numeric->Memory + Col_tuples [col] - 1 ; DEBUG2 (("Freeing tuple list col "ID", p-S "ID", size "ID"\n", col, (Int) (p-Numeric->Memory), p->header.size)) ; ASSERT (p->header.size > 0) ; ASSERT (p >= Numeric->Memory + Numeric->itail) ; ASSERT (p < Numeric->Memory + Numeric->size) ; p->header.size = -p->header.size ; Col_tuples [col] = 0 ; } } /* ---------------------------------------------------------------------- */ /* mark the elements, and compress the name space */ /* ---------------------------------------------------------------------- */ nel = Work->nel ; ASSERT (nel < Work->elen) ; #ifndef NDEBUG nmark = 0 ; UMF_dump_current_front (Numeric, Work, FALSE) ; DEBUGm1 (("E [0] "ID" \n", E [0])) ; ASSERT (IMPLIES (E [0], Work->Flublock == (Entry *) (Numeric->Memory + E [0]))) ; ASSERT (IMPLIES (Work->Flublock, Work->Flublock == (Entry *) (Numeric->Memory + E [0]))) ; ASSERT ((E [0] != 0) == (Work->Flublock != (Entry *) NULL)) ; #endif e2 = 0 ; for (e = 0 ; e <= nel ; e++) /* for all elements in order of creation */ { if (E [e]) { psrc = Numeric->Memory + E [e] ; psrc-- ; /* get the header of this block */ if (e > 0) { e2++ ; /* do not renumber element zero */ } ASSERT (psrc->header.size > 0) ; psrc->header.size = e2 ; /* store the new name in the header */ #ifndef NDEBUG nmark++ ; #endif DEBUG7 ((ID":: Mark e "ID" at psrc-S "ID", new e "ID"\n", nmark, e, (Int) (psrc-Numeric->Memory), e2)) ; E [e] = 0 ; if (e == Work->prior_element) { Work->prior_element = e2 ; } } } /* all 1..e2 are now in use (element zero may or may not be in use) */ Work->nel = e2 ; nel = Work->nel ; #ifndef NDEBUG for (e = 0 ; e < Work->elen ; e++) { ASSERT (!E [e]) ; } #endif /* ---------------------------------------------------------------------- */ /* compress the elements */ /* ---------------------------------------------------------------------- */ /* point to tail marker block of size 1 + header */ psrc = Numeric->Memory + Numeric->size - 2 ; pdest = psrc ; prevsize = psrc->header.prevsize ; DEBUG7 (("Starting the compression:\n")) ; while (prevsize > 0) { /* ------------------------------------------------------------------ */ /* move up to the next element above the current header, and */ /* get the element name and size */ /* (if it is an element, the name will be positive) */ /* ------------------------------------------------------------------ */ size = prevsize ; psrc -= (size + 1) ; e = psrc->header.size ; prevsize = psrc->header.prevsize ; /* top block at tail has prevsize of 0 */ /* a free block will have a negative size, so skip it */ /* otherwise, if size >= 0, it holds the element name, not the size */ DEBUG8 (("psrc-S: "ID" prevsize: "ID" size: "ID, (Int) (psrc-Numeric->Memory), prevsize, size)) ; if (e == 0) { /* -------------------------------------------------------------- */ /* this is the current frontal matrix */ /* -------------------------------------------------------------- */ Entry *F1, *F2, *Fsrc, *Fdst ; Int c, r, k, dr, dc, gap, gap1, gap2, nb ; /* shift the frontal matrix down */ F1 = (Entry *) (psrc + 1) ; /* get the size of the current front. r and c could be zero */ k = Work->fnpiv ; dr = Work->fnr_curr ; dc = Work->fnc_curr ; r = Work->fnrows ; c = Work->fncols ; nb = Work->nb ; ASSERT ((dr >= 0 && (dr % 2) == 1) || dr == 0) ; ASSERT (drnew >= 0) ; if (drnew % 2 == 0) { /* make sure leading frontal matrix dimension is always odd */ drnew++ ; } drnew = MIN (dr, drnew) ; ASSERT ((drnew >= 0 && (drnew % 2) == 1) || drnew == 0) ; pnext = pdest ; #ifndef NDEBUG DEBUGm2 (("move front: dr "ID" dc "ID" r "ID" drnew "ID" c "ID " dcnew " ID" k "ID"\n", dr, dc, r, drnew, c, dcnew, k)) ; DEBUG7 (("\n")) ; DEBUG7 ((ID":: Move current frontal matrix from: psrc-S: "ID" \n", nmark, (Int) (psrc-Numeric->Memory))) ; nmark-- ; ASSERT (E [e] == 0) ; ASSERT (Work->Flublock == F1) ; ASSERT (Work->Flblock == Work->Flublock + nb*nb) ; ASSERT (Work->Fublock == Work->Flblock + dr*nb) ; ASSERT (Work->Fcblock == Work->Fublock + nb*dc) ; DEBUG7 (("C block: ")) ; UMF_dump_dense (Work->Fcblock, dr, r, c) ; DEBUG7 (("L block: ")) ; UMF_dump_dense (Work->Flblock, dr, r, k); DEBUG7 (("U' block: ")) ; UMF_dump_dense (Work->Fublock, dc, c, k) ; DEBUG7 (("LU block: ")) ; UMF_dump_dense (Work->Flublock, nb, k, k) ; ASSERT (r <= drnew && c <= dcnew && drnew <= dr && dcnew <= dc) ; #endif /* compact frontal matrix to drnew-by-dcnew before moving it */ /* do not compact the LU block (nb-by-nb) */ /* compact the columns of L (from dr-by-nb to drnew-by-nb) */ Fsrc = Work->Flblock ; Fdst = Work->Flblock ; ASSERT (Fdst == F1 + nb*nb) ; gap1 = dr - r ; gap2 = drnew - r ; ASSERT (gap1 >= 0) ; for (j = 0 ; j < k ; j++) { for (i = 0 ; i < r ; i++) { *Fdst++ = *Fsrc++ ; } Fsrc += gap1 ; Fdst += gap2 ; } ASSERT (Fdst == F1 + nb*nb + drnew*k) ; Fdst += drnew * (nb - k) ; /* compact the rows of U (U' from dc-by-nb to dcnew-by-nb) */ Fsrc = Work->Fublock ; ASSERT (Fdst == F1 + nb*nb + drnew*nb) ; gap1 = dc - c ; gap2 = dcnew - c ; for (i = 0 ; i < k ; i++) { for (j = 0 ; j < c ; j++) { *Fdst++ = *Fsrc++ ; } Fsrc += gap1 ; Fdst += gap2 ; } ASSERT (Fdst == F1 + nb*nb + drnew*nb + dcnew*k) ; Fdst += dcnew * (nb - k) ; /* compact the columns of C (from dr-by-dc to drnew-by-dcnew) */ Fsrc = Work->Fcblock ; ASSERT (Fdst == F1 + nb*nb + drnew*nb + nb*dcnew) ; gap1 = dr - r ; gap2 = drnew - r ; for (j = 0 ; j < c ; j++) { for (i = 0 ; i < r ; i++) { *Fdst++ = *Fsrc++ ; } Fsrc += gap1 ; Fdst += gap2 ; } ASSERT (Fdst == F1 + nb*nb + drnew*nb + nb*dcnew + drnew*c) ; /* recompute Fcpos, if necessary */ if (do_Fcpos) { Int *Fcols, *Fcpos ; Fcols = Work->Fcols ; Fcpos = Work->Fcpos ; for (j = 0 ; j < c ; j++) { col = Fcols [j] ; ASSERT (col >= 0 && col < Work->n_col) ; ASSERT (Fcpos [col] == j * dr) ; Fcpos [col] = j * drnew ; } #ifndef NDEBUG { Int cnt = 0 ; for (j = 0 ; j < Work->n_col ; j++) { if (Fcpos [j] != EMPTY) cnt++ ; } DEBUGm2 (("Recompute Fcpos cnt "ID" c "ID"\n", cnt, c)) ; ASSERT (cnt == c) ; } #endif } #ifndef NDEBUG DEBUGm2 (("Compacted front, drnew "ID" dcnew "ID"\n", drnew, dcnew)) ; DEBUG7 (("C block: ")) ; UMF_dump_dense (F1 + nb*nb + drnew*nb + nb*dcnew, drnew, r, c) ; DEBUG7 (("L block: ")) ; UMF_dump_dense (F1 + nb*nb, drnew, r, k) ; DEBUG7 (("U block: ")) ; UMF_dump_dense (F1 + nb*nb + drnew*nb, nb, k, c) ; DEBUG7 (("LU block: ")) ; UMF_dump_dense (F1, nb, k, k) ; #endif /* Compacted dimensions of the new frontal matrix. */ Work->fnr_curr = drnew ; Work->fnc_curr = dcnew ; Work->fcurr_size = (drnew + nb) * (dcnew + nb) ; size = UNITS (Entry, Work->fcurr_size) ; /* make sure the object doesn't evaporate. The front can have * zero size (Work->fcurr_size = 0), but the size of the memory * block containing it cannot have zero size. */ size = MAX (1, size) ; /* get the destination of frontal matrix */ pnext->header.prevsize = size ; pdest -= (size + 1) ; F2 = (Entry *) (pdest + 1) ; ASSERT ((unsigned Int) psrc + 1 + size <= (unsigned Int) pnext) ; ASSERT (psrc <= pdest) ; ASSERT (F1 <= F2) ; /* move the C block first */ Fsrc = F1 + nb*nb + drnew*nb + nb*dcnew + drnew*c ; Fdst = F2 + nb*nb + drnew*nb + nb*dcnew + drnew*c ; gap = drnew - r ; for (j = c-1 ; j >= 0 ; j--) { Fsrc -= gap ; Fdst -= gap ; /* move column j of C */ for (i = r-1 ; i >= 0 ; i--) { *--Fdst = *--Fsrc ; } } ASSERT (Fsrc == F1 + nb*nb + drnew*nb + nb*dcnew) ; ASSERT (Fdst == F2 + nb*nb + drnew*nb + nb*dcnew) ; /* move the U block */ Fsrc -= dcnew * (nb - k) ; Fdst -= dcnew * (nb - k) ; ASSERT (Fsrc == F1 + nb*nb + drnew*nb + dcnew*k) ; ASSERT (Fdst == F2 + nb*nb + drnew*nb + dcnew*k) ; gap = dcnew - c ; for (i = k-1 ; i >= 0 ; i--) { Fsrc -= gap ; Fdst -= gap ; for (j = c-1 ; j >= 0 ; j--) { *--Fdst = *--Fsrc ; } } ASSERT (Fsrc == F1 + nb*nb + drnew*nb) ; ASSERT (Fdst == F2 + nb*nb + drnew*nb) ; /* move the L block */ Fsrc -= drnew * (nb - k) ; Fdst -= drnew * (nb - k) ; ASSERT (Fsrc == F1 + nb*nb + drnew*k) ; ASSERT (Fdst == F2 + nb*nb + drnew*k) ; gap = drnew - r ; for (j = k-1 ; j >= 0 ; j--) { Fsrc -= gap ; Fdst -= gap ; for (i = r-1 ; i >= 0 ; i--) { *--Fdst = *--Fsrc ; } } ASSERT (Fsrc == F1 + nb*nb) ; ASSERT (Fdst == F2 + nb*nb) ; /* move the LU block */ Fsrc -= nb * (nb - k) ; Fdst -= nb * (nb - k) ; ASSERT (Fsrc == F1 + nb*k) ; ASSERT (Fdst == F2 + nb*k) ; gap = nb - k ; for (j = k-1 ; j >= 0 ; j--) { Fsrc -= gap ; Fdst -= gap ; for (i = k-1 ; i >= 0 ; i--) { *--Fdst = *--Fsrc ; } } ASSERT (Fsrc == F1) ; ASSERT (Fdst == F2) ; E [0] = (pdest + 1) - Numeric->Memory ; Work->Flublock = (Entry *) (Numeric->Memory + E [0]) ; ASSERT (Work->Flublock == F2) ; Work->Flblock = Work->Flublock + nb * nb ; Work->Fublock = Work->Flblock + drnew * nb ; Work->Fcblock = Work->Fublock + nb * dcnew ; pdest->header.prevsize = 0 ; pdest->header.size = size ; #ifndef NDEBUG DEBUG7 (("After moving compressed current frontal matrix:\n")) ; DEBUG7 (("C block: ")) ; UMF_dump_dense (Work->Fcblock, drnew, r, c) ; DEBUG7 (("L block: ")) ; UMF_dump_dense (Work->Flblock, drnew, r, k); DEBUG7 (("U' block: ")) ; UMF_dump_dense (Work->Fublock, dcnew, c, k) ; DEBUG7 (("LU block: ")) ; UMF_dump_dense (Work->Flublock, nb, k, k) ; #endif } else if (e > 0) { /* -------------------------------------------------------------- */ /* this is an element, compress and move from psrc down to pdest */ /* -------------------------------------------------------------- */ #ifndef NDEBUG DEBUG7 (("\n")) ; DEBUG7 ((ID":: Move element "ID": from: "ID" \n", nmark, e, (Int) (psrc-Numeric->Memory))) ; nmark-- ; ASSERT (e <= nel) ; ASSERT (E [e] == 0) ; #endif /* -------------------------------------------------------------- */ /* get the element scalars, and pointers to C, Rows, and Cols: */ /* -------------------------------------------------------------- */ p = psrc + 1 ; GET_ELEMENT (epsrc, p, Cols, Rows, ncols, nrows, C) ; nrowsleft = epsrc->nrowsleft ; ncolsleft = epsrc->ncolsleft ; cdeg = epsrc->cdeg ; rdeg = epsrc->rdeg ; #ifndef NDEBUG DEBUG7 ((" nrows "ID" nrowsleft "ID"\n", nrows, nrowsleft)) ; DEBUG7 ((" ncols "ID" ncolsleft "ID"\n", ncols, ncolsleft)) ; DEBUG8 ((" Rows:")) ; for (i = 0 ; i < nrows ; i++) DEBUG8 ((" "ID, Rows [i])) ; DEBUG8 (("\n Cols:")) ; for (j = 0 ; j < ncols ; j++) DEBUG8 ((" "ID, Cols [j])) ; DEBUG8 (("\n")) ; #endif /* -------------------------------------------------------------- */ /* determine the layout of the new element */ /* -------------------------------------------------------------- */ csize = nrowsleft * ncolsleft ; size2 = UNITS (Element, 1) + UNITS (Int, nrowsleft + ncolsleft) + UNITS (Entry, csize) ; DEBUG7 (("Old size "ID" New size "ID"\n", size, size2)) ; pnext = pdest ; pnext->header.prevsize = size2 ; pdest -= (size2 + 1) ; ASSERT (size2 <= size) ; ASSERT ((unsigned Int) psrc + 1 + size <= (unsigned Int) pnext) ; ASSERT (psrc <= pdest) ; p = pdest + 1 ; epdest = (Element *) p ; p += UNITS (Element, 1) ; Cols2 = (Int *) p ; Rows2 = Cols2 + ncolsleft ; p += UNITS (Int, nrowsleft + ncolsleft) ; C2 = (Entry *) p ; ASSERT (epdest >= epsrc) ; ASSERT (Rows2 >= Rows) ; ASSERT (Cols2 >= Cols) ; ASSERT (C2 >= C) ; ASSERT (p + UNITS (Entry, csize) == pnext) ; /* -------------------------------------------------------------- */ /* move the contribution block */ /* -------------------------------------------------------------- */ /* overlap = psrc + size + 1 > pdest ; */ if (nrowsleft < nrows || ncolsleft < ncols) { /* ---------------------------------------------------------- */ /* compress contribution block in place prior to moving it */ /* ---------------------------------------------------------- */ DEBUG7 (("Compress C in place prior to move:\n")); #ifndef NDEBUG UMF_dump_dense (C, nrows, nrows, ncols) ; #endif C1 = C ; C3 = C ; for (j = 0 ; j < ncols ; j++) { if (Cols [j] >= 0) { for (i = 0 ; i < nrows ; i++) { if (Rows [i] >= 0) { *C3++ = C1 [i] ; } } } C1 += nrows ; } ASSERT (C3-C == csize) ; DEBUG8 (("Newly compressed contrib. block (all in use):\n")) ; #ifndef NDEBUG UMF_dump_dense (C, nrowsleft, nrowsleft, ncolsleft) ; #endif } /* shift the contribution block down */ C += csize ; C2 += csize ; for (i = 0 ; i < csize ; i++) { *--C2 = *--C ; } /* -------------------------------------------------------------- */ /* move the row indices */ /* -------------------------------------------------------------- */ i2 = nrowsleft ; for (i = nrows - 1 ; i >= 0 ; i--) { ASSERT (Rows2+i2 >= Rows+i) ; if (Rows [i] >= 0) { Rows2 [--i2] = Rows [i] ; } } ASSERT (i2 == 0) ; j2 = ncolsleft ; for (j = ncols - 1 ; j >= 0 ; j--) { ASSERT (Cols2+j2 >= Cols+j) ; if (Cols [j] >= 0) { Cols2 [--j2] = Cols [j] ; } } ASSERT (j2 == 0) ; /* -------------------------------------------------------------- */ /* construct the new header */ /* -------------------------------------------------------------- */ /* E [0...e] is now valid */ E [e] = (pdest + 1) - Numeric->Memory ; epdest = (Element *) (pdest + 1) ; epdest->next = EMPTY ; /* destroys the son list */ epdest->ncols = ncolsleft ; epdest->nrows = nrowsleft ; epdest->ncolsleft = ncolsleft ; epdest->nrowsleft = nrowsleft ; epdest->rdeg = rdeg ; epdest->cdeg = cdeg ; ASSERT (size2 <= size) ; pdest->header.prevsize = 0 ; pdest->header.size = size2 ; DEBUG7 (("After moving it:\n")) ; #ifndef NDEBUG UMF_dump_element (Numeric, Work, e, FALSE) ; #endif } #ifndef NDEBUG else { DEBUG8 ((" free\n")) ; } #endif DEBUG7 (("psrc "ID" tail "ID"\n", (Int) (psrc-Numeric->Memory), Numeric->itail)) ; } ASSERT (psrc == Numeric->Memory + Numeric->itail) ; ASSERT (nmark == 0) ; /* ---------------------------------------------------------------------- */ /* final tail pointer */ /* ---------------------------------------------------------------------- */ ASSERT (pdest >= Numeric->Memory + Numeric->itail) ; Numeric->itail = pdest - Numeric->Memory ; pdest->header.prevsize = 0 ; Numeric->ibig = EMPTY ; Numeric->tail_usage = Numeric->size - Numeric->itail ; /* ---------------------------------------------------------------------- */ /* clear the unused E [nel+1 .. Work->elen - 1] */ /* ---------------------------------------------------------------------- */ for (e = nel+1 ; e < Work->elen ; e++) { E [e] = 0 ; } #ifndef NDEBUG UMF_dump_packed_memory (Numeric, Work) ; #endif DEBUG8 (("::::GARBAGE COLLECTION DONE::::\n")) ; }