From d0c0cc957820b7887d568b55fa5f7acaf2ab64df Mon Sep 17 00:00:00 2001 From: mer0m Date: Tue, 18 Oct 2016 11:16:28 +0000 Subject: [PATCH] Add files via upload --- fit_waist.py | 52 +++++++++++++++++ pm100d_waist.py | 178 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 230 insertions(+) create mode 100644 fit_waist.py create mode 100644 pm100d_waist.py diff --git a/fit_waist.py b/fit_waist.py new file mode 100644 index 0000000..a7d7df9 --- /dev/null +++ b/fit_waist.py @@ -0,0 +1,52 @@ +from scipy.optimize import curve_fit +import csv, numpy, glob +from scipy.special import erf +import matplotlib.pyplot as plt + +'''power function to optimize''' +def P(x, Po, Pmax, xo, w): + return Po+0.5*Pmax*(1.-erf(2.**0.5*(x-xo)/w)) + + +'''load and fit beam section''' +files = glob.glob('*.dat') +files.sort() +data_waist = [] +plt.close() +fig, p = plt.subplots(2, 1) +for f in files: + with open(f, 'r') as dest_f: + raw = csv.reader(dest_f, delimiter = '\t', quotechar = '"') + data = [value for value in raw] + data = numpy.asarray(data, dtype = float) + xmes = data[:,0] + Pmes = data[:,1] + + '''optimization with non-linear least squares method''' + Ppopt, Pcov = curve_fit(P, xmes, Pmes) + data_waist.append([int(f[-7:-4]), Ppopt[3]]) + + '''plot''' + p[0].plot(xmes, Pmes, 'o') + p[0].plot(numpy.linspace(xmes[0], xmes[-1], 100), P(numpy.linspace(xmes[0], xmes[-1], 100), *Ppopt)) + +p[0].grid() + +'''return waist(z) table''' +data_waist = numpy.asarray(data_waist, dtype = float) +print(data_waist) + +'''waist function to optimize''' +def W(z, w0, z0): + return w0*(1.+((z-z0)*1542e-6/(numpy.pi*w0**2))**2)**0.5 + +popt, cov = curve_fit(W, data_waist[:,0], data_waist[:,1]) +print(popt[0], popt[1]) + +p[1].plot(data_waist[:,0], data_waist[:,1], 'bo') +p[1].plot(data_waist[:,0], -data_waist[:,1], 'bo') +p[1].plot(numpy.linspace(data_waist[0,0], data_waist[-1,0], 100), W(numpy.linspace(data_waist[0,0], data_waist[-1,0], 100), *popt), 'r') +p[1].plot(numpy.linspace(data_waist[0,0], data_waist[-1,0], 100), -W(numpy.linspace(data_waist[0,0], data_waist[-1,0], 100), *popt), 'r') +p[1].grid() + +plt.show() \ No newline at end of file diff --git a/pm100d_waist.py b/pm100d_waist.py new file mode 100644 index 0000000..97bb1af --- /dev/null +++ b/pm100d_waist.py @@ -0,0 +1,178 @@ +#!/usr/bin/env python + +import argparse, time, os +import matplotlib.pyplot as plt + +#============================================================================== + +# Path +PATH = os.getcwd() +# File footer +OFILENAME = '130' + +#============================================================================== + +def parse(): + """ + Specific parsing procedure for transfering data from Thorlabs PM100D. + :returns: populated namespace (parser) + """ + parser = argparse.ArgumentParser(description = 'Acquire data from Thorlabs PM100D', + epilog = 'Example: \'./pm100d.py -st 10 -o toto\' logs PM100D every 10 seconds to output file YYYYMMDD-HHMMSS-toto.dat') + + parser.add_argument('-p', + action='store', + dest='path', + default=PATH, + help='Absolute path (default '+PATH+')') + + parser.add_argument('-o', + action='store', + dest='ofile', + default=OFILENAME, + help='Output data filename (default '+OFILENAME+')') + + args = parser.parse_args() + return args + +#============================================================================== + +class usbtmc: + def __init__(self, device): + self.device = device + self.FILE = os.open(device, os.O_RDWR) + + def write(self, command): + os.write(self.FILE, command); + + def read(self, length = 4000): + return os.read(self.FILE, length) + + def getName(self): + self.write("*IDN?") + return self.read(300) + + def sendReset(self): + self.write("*RST") + +#============================================================================== + +class instrument: + """Class to control a SCPI compatible instrument""" + def __init__(self, device): + print 'Connecting to device %s...' %device + self.meas = usbtmc(device) + self.name = self.meas.getName() + print self.name + print ' --> Ok' + + def write(self, command): + """Send an arbitrary command directly to the scope""" + self.meas.write(command) + + def read(self, command): + """Read an arbitrary amount of data directly from the scope""" + return self.meas.read(command) + + def reset(self): + """Reset the instrument""" + self.meas.sendReset() + + def value(self): + self.write('MEAS?') + return self.read(300) + +#============================================================================== + +def acqu_PM100D(instrument, path, ofile): + + t0 = time.time() + filename = time.strftime("%Y%m%d-%H%M%S", time.gmtime(t0)) + '-' + ofile + '.dat' + print('Opening %s' %filename) + data_file = open(filename, 'wr', 0) + dx = 0. + + xmes = [] + Pmes = [] + plt.ion() + fig = plt.figure() + ax1 = fig.add_subplot(111) + line1, = ax1.plot(xmes, Pmes, 'o') + + # Infinite loop + while True: + try: + keypressed = raw_input("Press Enter to continue...\n") + + if keypressed=='': + # Power values + sensors_values = instrument.value() + sensors_values = sensors_values.replace('E', 'e') + string = "%f\t%s" % (dx , sensors_values) + data_file.write(string) # Write in a file + print(string) + + xmes.append(dx) + Pmes.append(float(sensors_values)) + + dx = dx + 0.05 + + elif keypressed.isdigit(): + print('Closing %s' %filename) + data_file.close() + t0 = time.time() + filename = time.strftime("%Y%m%d-%H%M%S", time.gmtime(t0)) + '-' + keypressed + '.dat' + print('Opening %s' %filename) + data_file = open(filename, 'wr', 0) + dx = 0. + + xmes = [] + Pmes = [] + line1, = ax1.plot(xmes, Pmes, 'o') + + else: + raise KeyboardInterrupt + + + line1.set_data(xmes, Pmes) + ax1.relim() + ax1.autoscale_view() + fig.canvas.draw() + + except Exception as ex: + print 'Exception during controler data reading: ' + str(ex) + + except KeyboardInterrupt: + print '\n --> Disconnected' + data_file.close() + + # To stop the loop in a clean way + break + +#============================================================================== + +def main(): + """ + Main script + """ + # Parse command line + args = parse() + # path + path = args.path + # Data output filename + ofile = args.ofile + + try: + pm100 = instrument("/dev/usbtmc0") + + # acquisition with 2 sec. timeout + acqu_PM100D(pm100, path, ofile) + + except Exception as ex: + print 'Oups '+str(ex) + print 'Program ending\n' + +#============================================================================== + +if __name__ == "__main__": + main() -- 2.16.4